Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015942792.1_cds_XP_016486133.1_77002
CDS Infomation

[gene=LOC107806489] [db_xref=GeneID:107806489] [protein=DEAD-box ATP-dependent RNA helicase 53-like] [protein_id=XP_016486133.1] [location=complement(join(30736..30772,31599..32038,32653..32814,34539..34763,34910..35008,35112..35523,35713..35840,37310..37705))] [gbkey=CDS]
Sequence

ATGGCTTCCCTCTCCACTCCTTTAAGATACAGCAAAATGAATAGTCTTTTTCTACTAAGA
AACACTTCATCTTCACTAACCTCAAAAAGGGTCACCTTAAATTCACTTTCCCATATCTTT
ACTGATAAATTCATTCCAAGAAATGGGCTTAAAGTTTCACAAATTCACAGCTTTACCACT
TCTGTAACTCCATCAGCAGCAGTGTCGAATTGGGTTAATGGTAATTTTGGGTATAGTGTG
AGGGCATTTAATGTGGCTGCTACTGCGTTTGTAGAATTAGAAGAAGAGTGTGATGTTGAT
AATGGGGTTGGGCTTGAGATATCAAAGCTGGGTATTTCTGAGGAAATTGTTTCTGCTTTG
GCACAAAGGGGAATTACTTCTCTTTTTCCTATTCAGAAAGCTGTTTTGGAACCAGCAATG
CAGGGGTCGGACATGATTGGCCGAGCTAGAACTGGAACTGGAAAGACACTAGCTTTTGGC
ATTCCTATCATGGATAAGATCATCAAATTCAACAACAAAAAAGGACGGGGAAGAAACCCT
TTAGCATTGATCTTGGCTCCCACTAGAGAACTTGCACGCCAGGTGGAGAAAGAATTTTAT
GAATCTGCTCCCGGTTTGGATACACTGTGTGTTTATGGTGGTGTCCCCATTCAACGCCAA
ATGAGTACTCTTCAAAGGGGTGCAGACATTGTTGTTGGAACACCTGGTCGAATCATTGAT
CTGCTGAAGAGGAGGTCCTTAAATTTATCAGAAATCCAGTTCGTTGTTCTAGATGAAGCT
GATCAGATGCTTAATGTGGGCTTCGCGGAGGATGTTGAAACCATTCTTGAAAATGTTCGG
CAGAAACATCAGACGATGATGTTTTCAGCCACAATGCCAAGTTGGATAATGAAAATTACC
AACAAGTTCTTGAAGAAGCCAATTCACATTGATCTTGTAGGGGATTCTGACCAGAAATTA
GCCGATGGCATTTCCTTGTATTCAATTGCTTGTGAGATGCGTCAGAAACCAGCAGTTCTT
GGACCCTTAATATCAGAGCATGCAAAAGGAGGCAAGTGTATTGTGTTTACCCAAACAAAG
CGTGATGCTGATAGATTGGCGAGTGCAATGCAAAAAACTTTGAGATGTGAAGCTTTGCAT
GGGGATATCACGCAAAGCCAGAGGGAGAGAACTCTGTCCGGTTTCCGACAAGGTCAATTC
AATGTATTAGTGGCCACTGATGTTGCTGCTCGAGGACTTGATGTACCTAATGTTGATCTG
GTGATACATTATGAACTTCCGAACTCTTCAGAGATCTTTGTTCATCGATCTGGTCGAACC
GGACGTGCTGGGAAGAAAGGAAGTGCCATTCTCATGCATTCCTCAAAACAGCACAGGGAT
TTGAAAGGTATTGAACATGATGCCGGGTGCAGATTTACTGAGCTCCCAAGTATTAAAGTA
GAGGCTGGAGCAGCAGACATGTATAGTGACATGGGCAAAGGCAGCGACCGCTTTGGCTCC
TATGGAGGCACCATGCGTAGTCGATCTGGTGATTTTGGTGGAAGTCGTTCTGGTGGCTAT
GGAAATAAAGGCAGCAGATTTGGTGGAGAAGGCGCTTCATCTTCTCGAACAGGTGGATAC
AGTGGAACTGGTTCTGGAAGATCAGGGGGTGGCTATGGTGGAACTAGCTCAGGCAGCTCA
GGAAAGTTTGGTGGTTCTGGAGGATCAAAACGTTTGGGTGGTTTCCGTAACTTTGGTTCT
GGCCGTTCAAGTAGATTTGGAGATTCACAGTCTGACCGCAATAACCGTTCAAGCCGTTTT
GATGACTTCGGAGATGGCAAGGATAGTGGTGATCAGAGTTCAGGGAGGAACTCCATTTCA
AGGAGGCGTGCCCCCTGGGACTTCTCCATTAATAGATGA

Peptide Sequence

PEP ID

XP_016486133.1
PEP Infomation

PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Nicotiana tabacum]
Sequence

MASLSTPLRYSKMNSLFLLRNTSSSLTSKRVTLNSLSHIFTDKFIPRNGLKVSQIHSFTT
SVTPSAAVSNWVNGNFGYSVRAFNVAATAFVELEEECDVDNGVGLEISKLGISEEIVSAL
AQRGITSLFPIQKAVLEPAMQGSDMIGRARTGTGKTLAFGIPIMDKIIKFNNKKGRGRNP
LALILAPTRELARQVEKEFYESAPGLDTLCVYGGVPIQRQMSTLQRGADIVVGTPGRIID
LLKRRSLNLSEIQFVVLDEADQMLNVGFAEDVETILENVRQKHQTMMFSATMPSWIMKIT
NKFLKKPIHIDLVGDSDQKLADGISLYSIACEMRQKPAVLGPLISEHAKGGKCIVFTQTK
RDADRLASAMQKTLRCEALHGDITQSQRERTLSGFRQGQFNVLVATDVAARGLDVPNVDL
VIHYELPNSSEIFVHRSGRTGRAGKKGSAILMHSSKQHRDLKGIEHDAGCRFTELPSIKV
EAGAADMYSDMGKGSDRFGSYGGTMRSRSGDFGGSRSGGYGNKGSRFGGEGASSSRTGGY
SGTGSGRSGGGYGGTSSGSSGKFGGSGGSKRLGGFRNFGSGRSSRFGDSQSDRNNRSSRF
DDFGDGKDSGDQSSGRNSISRRRAPWDFSINR

Transcript Sequence

Gene sequence data has not been registered.